PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G037000.1
Common NameB456_004G037000, LOC105790290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 342aa    MW: 37808.2 Da    PI: 7.1539
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G037000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00094183202120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  nL+ H+
  Gorai.004G037000.1 183 FSCPLCCKTFNRYNNLQMHM 202
                         89*****************9 PP

2zf-C2H213.30.00026267289123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C +C k F  k + ++H +++
  Gorai.004G037000.1 267 FVCRKCEKAFAVKGDWRTHEKNC 289
                         89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.27E-5177205No hitNo description
SMARTSM003550.47183205IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18183210IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.0E-5183202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
SuperFamilySSF576673.81E-6249287No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5253287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035565267287IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTDPWFNFMP PSSNYTSSSS SSTVPTQNHP NPSSQPRTIF NKSQIPHHHP LKEALPFINY  60
LSLTSQQQQE SIKEPSSSSM EEEDKSIISL FPTIVDDGDD GYDYDEDDDD DGGVTVELHI  120
GLPNPSSDLK SRASSPSKDM TADKLQRNPV SAGAASGNST TPLSKGQYWI PTPSQILVGP  180
TQFSCPLCCK TFNRYNNLQM HMWGHGSQYR KGPDSLKGAQ PTAMLRLPCY CCSPGCKHNI  240
DNPRAKPLKD FKTLQTHYKR KHGIKPFVCR KCEKAFAVKG DWRTHEKNCG KVWYCICGSD  300
FKHKRSLKDH TKAFGPTGHG AVGGVDSLDE DDEPGSEIEP I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6184721e-109JX618472.1 Gossypium hirsutum clone NBRI_GE63960 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473259.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-118ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0D2RSW60.0A0A0D2RSW6_G
STRINGGLYMA12G36660.21e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2440534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-119C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]